<html><head><meta http-equiv="Content-Type" content="text/html charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class=""><div class=""></div><div class=""><div><blockquote type="cite" class=""><div class="">Am 26.06.2015 um 09:02 schrieb <a href="mailto:Serban.Georgescu@uk.fujitsu.com" class="">Serban.Georgescu@uk.fujitsu.com</a>:</div><br class="Apple-interchange-newline"><div class=""><div class="WordSection1" style="page: WordSection1; font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px;"><div style="margin: 0cm 0cm 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;" class=""><span style="font-size: 11pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);" class="">Hello Kate,<o:p class=""></o:p></span></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;" class=""><span style="font-size: 11pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);" class=""> </span></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;" class=""><span style="font-size: 11pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);" class="">The issue might be related to some recent bug in 2.9.3.<o:p class=""></o:p></span></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;" class=""><span style="font-size: 11pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);" class="">I am saying this because if I try to remesh with that I get a crash, while remeshing works quite well with an older Gmsh that I have (2.8.6).<o:p class=""></o:p></span></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;" class=""><span style="font-size: 11pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);" class=""> </span></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;" class=""><span style="font-size: 11pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);" class="">Also, I think you get a better mesh if you follow Tutorial 13 (<a href="http://geuz.org/gmsh/doc/texinfo/gmsh.html#t13_002egeo" style="color: purple; text-decoration: underline;" class="">http://geuz.org/gmsh/doc/texinfo/gmsh.html#t13_002egeo</a>) and reconstruct the edges as well.<o:p class=""></o:p></span></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;" class=""><span style="font-size: 11pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);" class="">If not, only the interiors of the faces will remeshed.<o:p class=""></o:p></span></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;" class=""><span style="font-size: 11pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);" class="">I’ve added an updated test.geo with does this.<o:p class=""></o:p></span></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;" class=""><span style="font-size: 11pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);" class=""> </span></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;" class=""><span style="font-size: 11pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);" class="">Best regards,<br class="">Serban<o:p class=""></o:p></span></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;" class=""><span style="font-size: 11pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);" class=""> </span></div><div class=""><div style="border-style: solid none none; border-top-color: rgb(181, 196, 223); border-top-width: 1pt; padding: 3pt 0cm 0cm;" class=""><div style="margin: 0cm 0cm 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;" class=""><b class=""><span lang="EN-US" style="font-size: 10pt; font-family: Tahoma, sans-serif;" class="">From:</span></b><span lang="EN-US" style="font-size: 10pt; font-family: Tahoma, sans-serif;" class=""><span class="Apple-converted-space"> </span>gmsh [<a href="mailto:gmsh-bounces@ace20.montefiore.ulg.ac.be" style="color: purple; text-decoration: underline;" class="">mailto:gmsh-bounces@ace20.montefiore.ulg.ac.be</a>]<span class="Apple-converted-space"> </span><b class="">On Behalf Of<span class="Apple-converted-space"> </span></b>look<br class=""><b class="">Sent:</b><span class="Apple-converted-space"> </span>25 June 2015 11:57<br class=""><b class="">To:</b><span class="Apple-converted-space"> </span><a href="mailto:gmsh@geuz.org" style="color: purple; text-decoration: underline;" class="">gmsh@geuz.org</a><br class=""><b class="">Subject:</b><span class="Apple-converted-space"> </span>[Gmsh] Remesh STL<o:p class=""></o:p></span></div></div></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;" class=""><o:p class=""> </o:p></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;" class=""><span style="font-size: 10pt; font-family: Verdana, sans-serif; background-color: rgb(247, 247, 247); background-position: initial initial; background-repeat: initial initial;" class="">Hello everybody,</span><span style="font-size: 10pt; font-family: Verdana, sans-serif;" class=""><br class=""><br class=""><span style="background-color: rgb(247, 247, 247); background-position: initial initial; background-repeat: initial initial;" class="">I am trying to remesh a very easy trivial *.stl geometry which I previously generated in Blender. Therefore I followed the instructions from a gmsh mailing list post: </span></span><a href="http://geuz.org/pipermail/gmsh/2011/006887.html" target="_blank" style="color: purple; text-decoration: underline;" class=""><span style="font-size: 10pt; font-family: Verdana, sans-serif; color: rgb(153, 0, 102); text-decoration: none;" class="">http://geuz.org/pipermail/gmsh/2011/006887.html</span></a><span style="font-size: 10pt; font-family: Verdana, sans-serif;" class=""><br class=""><br class=""><span style="background-color: rgb(247, 247, 247); background-position: initial initial; background-repeat: initial initial;" class="">1) Open inout.stl in gmsh (with gui)</span><br class=""><span style="background-color: rgb(247, 247, 247); background-position: initial initial; background-repeat: initial initial;" class="">2) Click on Mesh->Reclassify 2D</span><br class=""><span style="background-color: rgb(247, 247, 247); background-position: initial initial; background-repeat: initial initial;" class="">3) Click on "All" in step 1 and step 3, then click on "Reclassify"</span><br class=""><span style="background-color: rgb(247, 247, 247); background-position: initial initial; background-repeat: initial initial;" class="">4) Save the reclassified mesh as a new msh file -> reclassified_inout.msh</span><br class=""><span style="background-color: rgb(247, 247, 247); background-position: initial initial; background-repeat: initial initial;" class="">5) I can see several distinct surfaces when I open this new file and go to Tools/Visibility.</span><br class=""><span style="background-color: rgb(247, 247, 247); background-position: initial initial; background-repeat: initial initial;" class="">6) Write a new file test.geo:</span></span><o:p class=""></o:p></div><div class=""><div style="border: 1pt inset; padding: 5pt; background-color: rgb(247, 247, 255); background-position: initial initial; background-repeat: initial initial;" class=""><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: 'Courier New'; background-color: rgb(247, 247, 255); border: none; padding: 0cm; overflow: auto; background-position: initial initial; background-repeat: initial initial;" class="">Mesh.RemeshAlgorithm=1;<o:p class=""></o:p></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: 'Courier New'; background-color: rgb(247, 247, 255); border: none; padding: 0cm; background-position: initial initial; background-repeat: initial initial;" class="">Mesh.CharacteristicLengthFactor=0.05;<o:p class=""></o:p></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: 'Courier New'; background-color: rgb(247, 247, 255); border: none; padding: 0cm; background-position: initial initial; background-repeat: initial initial;" class=""><o:p class=""> </o:p></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: 'Courier New'; background-color: rgb(247, 247, 255); border: none; padding: 0cm; background-position: initial initial; background-repeat: initial initial;" class="">Merge "reclassified_inout.msh";<o:p class=""></o:p></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: 'Courier New'; background-color: rgb(247, 247, 255); border: none; padding: 0cm; background-position: initial initial; background-repeat: initial initial;" class=""><o:p class=""> </o:p></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: 'Courier New'; background-color: rgb(247, 247, 255); border: none; padding: 0cm; background-position: initial initial; background-repeat: initial initial;" class="">CreateTopology;<o:p class=""></o:p></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: 'Courier New'; background-color: rgb(247, 247, 255); border: none; padding: 0cm; background-position: initial initial; background-repeat: initial initial;" class=""><o:p class=""> </o:p></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: 'Courier New'; background-color: rgb(247, 247, 255); border: none; padding: 0cm; background-position: initial initial; background-repeat: initial initial;" class="">Compound Surface(23)={3};<o:p class=""></o:p></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: 'Courier New'; background-color: rgb(247, 247, 255); border: none; padding: 0cm; background-position: initial initial; background-repeat: initial initial;" class="">Compound Surface(24)={4};<o:p class=""></o:p></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: 'Courier New'; background-color: rgb(247, 247, 255); border: none; padding: 0cm; background-position: initial initial; background-repeat: initial initial;" class="">Compound Surface(25)={5};<o:p class=""></o:p></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: 'Courier New'; background-color: rgb(247, 247, 255); border: none; padding: 0cm; background-position: initial initial; background-repeat: initial initial;" class="">Compound Surface(26)={6};<o:p class=""></o:p></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: 'Courier New'; background-color: rgb(247, 247, 255); border: none; padding: 0cm; background-position: initial initial; background-repeat: initial initial;" class="">Compound Surface(27)={7};<o:p class=""></o:p></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: 'Courier New'; background-color: rgb(247, 247, 255); border: none; padding: 0cm; background-position: initial initial; background-repeat: initial initial;" class="">Compound Surface(28)={8};<o:p class=""></o:p></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: 'Courier New'; background-color: rgb(247, 247, 255); border: none; padding: 0cm; background-position: initial initial; background-repeat: initial initial;" class="">Compound Surface(29)={9};<o:p class=""></o:p></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: 'Courier New'; background-color: rgb(247, 247, 255); border: none; padding: 0cm; background-position: initial initial; background-repeat: initial initial;" class="">Compound Surface(30)={10};<o:p class=""></o:p></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: 'Courier New'; background-color: rgb(247, 247, 255); border: none; padding: 0cm; background-position: initial initial; background-repeat: initial initial;" class="">Compound Surface(31)={11};<o:p class=""></o:p></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: 'Courier New'; background-color: rgb(247, 247, 255); border: none; padding: 0cm; background-position: initial initial; background-repeat: initial initial;" class="">Compound Surface(32)={12};<o:p class=""></o:p></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: 'Courier New'; background-color: rgb(247, 247, 255); border: none; padding: 0cm; background-position: initial initial; background-repeat: initial initial;" class="">Compound Surface(33)={13};<o:p class=""></o:p></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: 'Courier New'; background-color: rgb(247, 247, 255); border: none; padding: 0cm; background-position: initial initial; background-repeat: initial initial;" class="">Compound Surface(34)={14};<o:p class=""></o:p></pre></div><div class=""><div style="margin: 0cm 0cm 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;" class=""><span style="font-size: 10pt; font-family: Verdana, sans-serif; background-color: rgb(247, 247, 247); background-position: initial initial; background-repeat: initial initial;" class="">7) Run </span><o:p class=""></o:p></div><div style="margin: 3.75pt 15pt 15pt;" class=""><div style="margin-bottom: 1.5pt;" class=""><div style="margin: 0cm 0cm 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;" class=""><span style="font-size: 8.5pt; font-family: Verdana, sans-serif;" class="">Code:<o:p class=""></o:p></span></div></div><div style="border: 1pt inset; padding: 5pt; background-color: rgb(247, 247, 255); background-position: initial initial; background-repeat: initial initial;" class=""><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: 'Courier New'; background-color: rgb(247, 247, 255); border: none; padding: 0cm; overflow: auto; background-position: initial initial; background-repeat: initial initial;" class="">gmsh -2 test.geo<o:p class=""></o:p></pre></div></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;" class=""><span style="font-size: 10pt; font-family: Verdana, sans-serif; background-color: rgb(247, 247, 247); background-position: initial initial; background-repeat: initial initial;" class="">Unfortunately I get the following error message:</span><o:p class=""></o:p></div><div style="margin: 3.75pt 15pt 15pt;" class=""><div style="margin-bottom: 1.5pt;" class=""><div style="margin: 0cm 0cm 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;" class=""><span style="font-size: 8.5pt; font-family: Verdana, sans-serif;" class="">Code:<o:p class=""></o:p></span></div></div><div style="border: 1pt inset; padding: 5pt; background-color: rgb(247, 247, 255); background-position: initial initial; background-repeat: initial initial;" class=""><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: 'Courier New'; background-color: rgb(247, 247, 255); border: none; padding: 0cm; overflow: auto; background-position: initial initial; background-repeat: initial initial;" class="">kate@kate-VirtualBox:/media/sf_documents/gmsh/Daten/inout_cubes_vonBlender$ gmsh -2 test.geo<o:p class=""></o:p></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: 'Courier New'; background-color: rgb(247, 247, 255); border: none; padding: 0cm; background-position: initial initial; background-repeat: initial initial;" class="">Info : Running 'gmsh -2 test.geo' [Gmsh 2.9.3, 1 node, max. 1 thread]<o:p class=""></o:p></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: 'Courier New'; background-color: rgb(247, 247, 255); border: none; padding: 0cm; background-position: initial initial; background-repeat: initial initial;" class="">Info : Started on Thu Jun 25 11:34:00 2015<o:p class=""></o:p></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: 'Courier New'; background-color: rgb(247, 247, 255); border: none; padding: 0cm; background-position: initial initial; background-repeat: initial initial;" class="">Info : Reading 'test.geo'...<o:p class=""></o:p></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: 'Courier New'; background-color: rgb(247, 247, 255); border: none; padding: 0cm; background-position: initial initial; background-repeat: initial initial;" class="">Info : Reading 'reclassified_inout.msh'...<o:p class=""></o:p></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: 'Courier New'; background-color: rgb(247, 247, 255); border: none; padding: 0cm; background-position: initial initial; background-repeat: initial initial;" class="">Info : 16 vertices<o:p class=""></o:p></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: 'Courier New'; background-color: rgb(247, 247, 255); border: none; padding: 0cm; background-position: initial initial; background-repeat: initial initial;" class="">Info : Vertex numbering is dense<o:p class=""></o:p></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: 'Courier New'; background-color: rgb(247, 247, 255); border: none; padding: 0cm; background-position: initial initial; background-repeat: initial initial;" class="">Info : 36 elements<o:p class=""></o:p></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: 'Courier New'; background-color: rgb(247, 247, 255); border: none; padding: 0cm; background-position: initial initial; background-repeat: initial initial;" class="">Info : Done reading 'reclassified_inout.msh'<o:p class=""></o:p></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: 'Courier New'; background-color: rgb(247, 247, 255); border: none; padding: 0cm; background-position: initial initial; background-repeat: initial initial;" class="">Info : Creating topology from mesh...<o:p class=""></o:p></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: 'Courier New'; background-color: rgb(247, 247, 255); border: none; padding: 0cm; background-position: initial initial; background-repeat: initial initial;" class="">Info : Removing duplicate mesh vertices...<o:p class=""></o:p></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: 'Courier New'; background-color: rgb(247, 247, 255); border: none; padding: 0cm; background-position: initial initial; background-repeat: initial initial;" class="">Info : Found 0 duplicate vertices <o:p class=""></o:p></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: 'Courier New'; background-color: rgb(247, 247, 255); border: none; padding: 0cm; background-position: initial initial; background-repeat: initial initial;" class="">Info : No duplicate vertices found<o:p class=""></o:p></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: 'Courier New'; background-color: rgb(247, 247, 255); border: none; padding: 0cm; background-position: initial initial; background-repeat: initial initial;" class="">Info : Done creating topology from mesh (0.000554 s)<o:p class=""></o:p></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: 'Courier New'; background-color: rgb(247, 247, 255); border: none; padding: 0cm; background-position: initial initial; background-repeat: initial initial;" class="">Info : Done reading 'test.geo'<o:p class=""></o:p></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: 'Courier New'; background-color: rgb(247, 247, 255); border: none; padding: 0cm; background-position: initial initial; background-repeat: initial initial;" class="">Info : Meshing 1D...<o:p class=""></o:p></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: 'Courier New'; background-color: rgb(247, 247, 255); border: none; padding: 0cm; background-position: initial initial; background-repeat: initial initial;" class="">Info : Done meshing 1D (1.7e-05 s)<o:p class=""></o:p></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: 'Courier New'; background-color: rgb(247, 247, 255); border: none; padding: 0cm; background-position: initial initial; background-repeat: initial initial;" class="">Info : Meshing 2D...<o:p class=""></o:p></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: 'Courier New'; background-color: rgb(247, 247, 255); border: none; padding: 0cm; background-position: initial initial; background-repeat: initial initial;" class="">Info : Meshing surface 23 (Compound surface, MeshAdapt)<o:p class=""></o:p></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: 'Courier New'; background-color: rgb(247, 247, 255); border: none; padding: 0cm; background-position: initial initial; background-repeat: initial initial;" class="">Info : Parametrizing surface 23 with 'convex map'<o:p class=""></o:p></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: 'Courier New'; background-color: rgb(247, 247, 255); border: none; padding: 0cm; background-position: initial initial; background-repeat: initial initial;" class="">[0]PETSC ERROR: --------------------- Error Message --------------------------------------------------------------<o:p class=""></o:p></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: 'Courier New'; background-color: rgb(247, 247, 255); border: none; padding: 0cm; background-position: initial initial; background-repeat: initial initial;" class="">[0]PETSC ERROR: Object is in wrong state<o:p class=""></o:p></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: 'Courier New'; background-color: rgb(247, 247, 255); border: none; padding: 0cm; background-position: initial initial; background-repeat: initial initial;" class="">[0]PETSC ERROR: Not for unassembled matrix<o:p class=""></o:p></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: 'Courier New'; background-color: rgb(247, 247, 255); border: none; padding: 0cm; background-position: initial initial; background-repeat: initial initial;" class="">[0]PETSC ERROR: See <a href="http://www.mcs.anl.gov/petsc/documentation/faq.html" style="color: purple; text-decoration: underline;" class="">http://www.mcs.anl.gov/petsc/documentation/faq.html</a> for trouble shooting.<o:p class=""></o:p></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: 'Courier New'; background-color: rgb(247, 247, 255); border: none; padding: 0cm; background-position: initial initial; background-repeat: initial initial;" class="">[0]PETSC ERROR: Petsc Release Version 3.5.2, Sep, 08, 2014 <o:p class=""></o:p></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: 'Courier New'; background-color: rgb(247, 247, 255); border: none; padding: 0cm; background-position: initial initial; background-repeat: initial initial;" class="">[0]PETSC ERROR: gmsh on a linux_complex_mumps_seq named kate-VirtualBox by kate Thu Jun 25 11:34:00 2015<o:p class=""></o:p></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: 'Courier New'; background-color: rgb(247, 247, 255); border: none; padding: 0cm; background-position: initial initial; background-repeat: initial initial;" class="">[0]PETSC ERROR: Configure options --with-pic --with-blas-lapack-lib="[/usr/local/lib/liblapack.a,/usr/local/lib/libblas.a,-lpthread]" --with-clanguage=cxx --with-debugging=0 --with-mpi=0 --with-x=0 --with-ssl=0 --with-mpiuni-fortran-binding=0 --with-mumps-include=/home/geuzaine/src/mumps_seq/include --with-mumps-lib="[/home/geuzaine/src/mumps_seq/lib/libcmumps.a,/home/geuzaine/src/mumps_seq/lib/libsmumps.a,/home/geuzaine/src/mumps_seq/lib/libdmumps.a,/home/geuzaine/src/mumps_seq/lib/libzmumps.a,/home/geuzaine/src/mumps_seq/lib/libmumps_common.a,/home/geuzaine/src/mumps_seq/lib/libmetis.a,/home/geuzaine/src/mumps_seq/lib/libmpiseq.a,/home/geuzaine/src/mumps_seq/lib/libpord.a]" --with-mumps-serial --with-shared-libraries=0 --with-scalar-type=complex<o:p class=""></o:p></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: 'Courier New'; background-color: rgb(247, 247, 255); border: none; padding: 0cm; background-position: initial initial; background-repeat: initial initial;" class="">[0]PETSC ERROR: #1 MatGetOrdering() line 189 in /home/geuzaine/src/petsc-3.5.2/src/mat/order/sorder.c<o:p class=""></o:p></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: 'Courier New'; background-color: rgb(247, 247, 255); border: none; padding: 0cm; background-position: initial initial; background-repeat: initial initial;" class="">[0]PETSC ERROR: #2 PCSetUp_ILU() line 196 in /home/geuzaine/src/petsc-3.5.2/src/ksp/pc/impls/factor/ilu/ilu.c<o:p class=""></o:p></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: 'Courier New'; background-color: rgb(247, 247, 255); border: none; padding: 0cm; background-position: initial initial; background-repeat: initial initial;" class="">[0]PETSC ERROR: #3 PCSetUp() line 902 in /home/geuzaine/src/petsc-3.5.2/src/ksp/pc/interface/precon.c<o:p class=""></o:p></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: 'Courier New'; background-color: rgb(247, 247, 255); border: none; padding: 0cm; background-position: initial initial; background-repeat: initial initial;" class="">[0]PETSC ERROR: #4 KSPSetUp() line 305 in /home/geuzaine/src/petsc-3.5.2/src/ksp/ksp/interface/itfunc.c<o:p class=""></o:p></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: 'Courier New'; background-color: rgb(247, 247, 255); border: none; padding: 0cm; background-position: initial initial; background-repeat: initial initial;" class="">[0]PETSC ERROR: #5 KSPSolve() line 417 in /home/geuzaine/src/petsc-3.5.2/src/ksp/ksp/interface/itfunc.c<o:p class=""></o:p></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: 'Courier New'; background-color: rgb(247, 247, 255); border: none; padding: 0cm; background-position: initial initial; background-repeat: initial initial;" class="">[0]PETSC ERROR: #6 _try() line 9 in /home/geuzaine/src/gmsh/Solver/linearSystemPETSc.hpp<o:p class=""></o:p></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: 'Courier New'; background-color: rgb(247, 247, 255); border: none; padding: 0cm; background-position: initial initial; background-repeat: initial initial;" class="">Aborted (core dumped)<o:p class=""></o:p></pre></div></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;" class=""><span style="font-size: 10pt; font-family: Verdana, sans-serif; background-color: rgb(247, 247, 247); background-position: initial initial; background-repeat: initial initial;" class="">I have attached the necessary files to reproduce the problem. I tried with gmsh 2.9.3 on OS X and gmsh 2.9.3 on Ubuntu.</span><span style="font-size: 10pt; font-family: Verdana, sans-serif;" class=""><br class=""><br class=""><span style="background-color: rgb(247, 247, 247); background-position: initial initial; background-repeat: initial initial;" class="">I would appreciate any help/hint/comment!</span><br class=""><br class=""><span style="background-color: rgb(247, 247, 247); background-position: initial initial; background-repeat: initial initial;" class="">Best regards,</span><br class=""><br class=""><span style="background-color: rgb(247, 247, 247); background-position: initial initial; background-repeat: initial initial;" class="">Kate</span></span><o:p class=""></o:p></div></div></div></div><table style="font-family: Helvetica; letter-spacing: normal; orphans: auto; text-indent: 0px; text-transform: none; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px;" class=""><tbody class=""><tr class=""><td bgcolor="#ffffff" class=""><font class=""><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: 'Courier New';" class="">______________________________________________________________________
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